Some useful command lines (well, useful for me, at least :)

sftools-compare-phases.sh warp.out.mtz ../../../../jia_mad/jia_mad.phic.mtz FC PHIC FC_1 PHIC_1
compare-arpwarp-solution.tcl ../../../../jia_mad/jia_mad.pdb hand_0_warpNtrace.pdb ../../xml/input.mtz.0.xml -v