Wow! More fun work today! Pulled out all the code from ,gactg and put it into ga.c and ga.h, then made gactg just call these routines to do it's work. Then, used ga.[ch] to add gactg functionality to contiger! So, now you can look at your contigs, and interactively run
genetic algorithms on them to fix them up. Hopefully will put this right into FPC which would rock, but might be difficult. I'll get it going in contiger first, then go crazy after that.