Monday, February 28, 2005

FORTRAN-2000.com (ha ha!) presents us this wonderful link to setting up cvs via ssh. later, links to abc for def and hkl for xyz.
cool, retro! iviews - Postscript editor.

Sunday, February 27, 2005

wow, a blast from the past: the hitchhikers guide to the galaxy game. like on the apple ][. neato!

the game

and

the walkthrough.

Saturday, February 26, 2005

an indepth review of the ipod shuffle
the grand sofitel demure amsterdam. take my advice, only stay in the presidential suite, you'll thank me later. great neighbourhood as well, right by the dam.



for discriminating guests, you'll want to stay in the maria di medici presidential suite. check the safe for a false bottom, and you'll find a little gift from me.

• To learn the interpretation of a Patterson crossword table, you should read
the following article: G.M. Sheldrick (1997) Meth.Enzym. 276:628
ok kids, ready for this? a bunch of perl+xml links for you (and me!):

The Source page:

Perl and XML

more Perl and XML

xml and sax machines part one and part two

schematron - Web Content Validation with XML::Schematron

XML and modern CGI applications.

XML::LibXML - An XML::Parser Alternative

Transforming XML With SAX Filters.

Writing SAX drivers for non-XML stuff. interesting.
linkfest

gnuplot slides (in pdf).

xmlsh - a shell for interacting with xml

a hack to get barcharts in gnuplot.

why oh why isn't there a free plotting program out there that does graphics worthy of Tufte? Tell me!
ipod shuffle on linux.

Friday, February 25, 2005


Position dependence of non-polar amino acid intrinsic helical propensities1

Michael Petukhov, 1, Victor Muñoz1, Noboru Yumoto2, Susumu Yoshikawa2 and Luis Serrano1

We have interpreted the results from these experiments with the model of the helix/coil transition (AGADIR), that indicates that the intrinsic helical propensity is position dependent. Gly, Val and Ile are more favorable at the first turn than in the middle of the -helix, while for Leu and Met we observe the opposite behavior.

Thursday, February 24, 2005

All of the USF (Uppsala Software Factor) manuals.
CNS map format
psychedelic drugs in the treatment of ocd. interesting.
secondary structure predictions

Wednesday, February 23, 2005

oh dear, lots of good papers, don't even have time to label them correctly. in any case, they are all good, so read them all, my dear smart readaers.

1

2

3

4

5

6
Journal of Grid Computing
5.1. nm command

The nm(1) command can report the list of symbols in a given library. It works on both static and shared
libraries. For a given library nm(1) can list the symbol names defined, each symbol's value, and the symbol's
type. It can also identify where the symbol was defined in the source code (by filename and line number), if
that information is available in the library (see the -l option).
Getting closer:


mistress 41 [~/down/solve-2.08/bin] % setenv LD_LIBRARY_PATH /home/sness/down/solve-2.08/bin
mistress 42 [~/down/solve-2.08/bin] % /lib/ld-linux.so.2 --list --library-path --inhibit-rpath /lib/i686/libc.so.6 . resolve
Program Library Howto
LD_LIBARARY_PATH and LD_PRELOAD

If you want to run a program that needs a different library:

1) ldd programname

This lists the dynamic libary dependencies of the program

2) Copy all those libraries to a directory

3) setenv LD_LIBRARY_PATH /path/to/directory/with/libs

LD_PRELOAD lets you load a different function instead of a libc library call
like if you wanted to make your own testing version of open().

So, so far, I can't override the GLIBC_2.3. If anyone has an idea
email me, please.